TestCasesAnnotate |
Annotate test case
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TestCasesAnnotateCreateIndex |
Annotate test case
Deletes index files to make sure they are properly built
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TestCasesAnnotateMem |
Annotate test case
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TestCasesAnnotateTabix |
Annotate test case using TABIX indexed files
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TestCasesAnnotateUseIndex |
Annotate test case
Uses the index files created during the execution of TestCasesAnnotateCreateIndex test suite
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TestCasesCaseControl |
Case control test cases
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TestCasesConcordance |
Concordance test cases
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TestCasesDbNsfp |
Test cases for dbNSFP database annotations
Note: This class tries to use 'data type cache' files
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TestCasesDbNsfpDeleteCache |
Test cases for dbNSFP database annotations
Note: This class deletes and re-builds 'data type cache' files
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TestCasesExtractFields |
Extract fields test cases
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TestCasesFilter |
Filter test cases
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TestCasesFilterALL |
Filter test cases for 'ALL' index
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TestCasesFilterChrPos |
Test cases for SnpSift filterChrPos
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TestCasesFilterGt |
Filter test cases for 'GT Filter'
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TestCasesGeneSets |
SnpSift 'gt' test cases
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TestCasesGt |
SnpSift 'gt' test cases
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TestCasesGwasCatalog |
Test GWAS catalog classes
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TestCasesHwe |
HWE test cases
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TestCasesIndex |
Annotate test case
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TestCasesIntervals |
SnpSIft intervals
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TestCasesLd |
Linkage disequilibrium test cases
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TestCasesPrivate |
SnpSift 'private' test cases
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TestCasesSort |
SnpSift 'split' test cases
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TestCasesSplit |
SnpSift 'split' test cases
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TestCasesVarType |
VarType test cases
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TestCasesVcfCheck |
VarType test cases
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