Package org.snpsift.testCases.unit
Class TestCasesCaseControl
- java.lang.Object
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- org.snpsift.testCases.unit.TestCasesCaseControl
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public class TestCasesCaseControl extends java.lang.Object
Case control test cases- Author:
- pcingola
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Constructor Summary
Constructors Constructor Description TestCasesCaseControl()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
test_01()
void
test_01_Str()
void
test_02()
void
test_02_Str()
void
test_02_Str2()
void
test_03()
void
test_03_Str()
void
test_03_Str2()
void
test_03_Str3()
void
test_04()
void
test_04_Str()
void
test_05()
void
test_06()
void
test_07()
void
test_08()
void
test_09()
Compare to results from PLINK using ChiSquare approximationvoid
test_10()
Compare to results from PLINK using Fisher exact test
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Method Detail
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test_01
public void test_01()
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test_01_Str
public void test_01_Str()
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test_02
public void test_02()
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test_02_Str
public void test_02_Str()
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test_02_Str2
public void test_02_Str2()
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test_03
public void test_03()
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test_03_Str
public void test_03_Str()
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test_03_Str2
public void test_03_Str2()
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test_03_Str3
public void test_03_Str3()
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test_04
public void test_04()
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test_04_Str
public void test_04_Str()
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test_05
public void test_05()
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test_06
public void test_06()
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test_07
public void test_07()
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test_08
public void test_08()
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test_09
public void test_09()
Compare to results from PLINK using ChiSquare approximation
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test_10
public void test_10()
Compare to results from PLINK using Fisher exact testNote: I use the rule of the thumb that Fisher exact test should be below 2 times Chi^2 estimation. This rule seems to work, at least for p-values in this example, which are between 10^-15 and 0.9
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