Class GwasCatalogFileIterator

  • All Implemented Interfaces:
    java.lang.Iterable<GwasCatalogEntry>, java.util.Iterator<GwasCatalogEntry>

    public class GwasCatalogFileIterator
    extends org.snpeff.fileIterator.LineClassFileIterator<GwasCatalogEntry>
    Iterate on each line of a GWAS catalog (TXT, tab separated format)
    Author:
    pcingola
    • Field Summary

      • Fields inherited from class org.snpeff.fileIterator.LineClassFileIterator

        clazz, debug, FIELD_NAME_SEPARATOR, fieldByName, fieldNames, fieldStr, separator
      • Fields inherited from class org.snpeff.fileIterator.FileIterator

        autoClose, countNewLineChars, fileName, fileSize, line, lineNum, next, nextLine, reader, verbose
    • Method Summary

      • Methods inherited from class org.snpeff.fileIterator.LineClassFileIterator

        createObject, fieldMap, iterator, readNext, setSeparator
      • Methods inherited from class org.snpeff.fileIterator.FileIterator

        close, countNewLineChars, getFilePointer, getLine, getLineNum, guessNewLineChars, hasNext, hasSeek, init, isDebug, load, next, readLine, ready, remove, seek, setAutoClose, setDebug, setVerbose, toString
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
      • Methods inherited from interface java.lang.Iterable

        forEach, spliterator
      • Methods inherited from interface java.util.Iterator

        forEachRemaining
    • Constructor Detail

      • GwasCatalogFileIterator

        public GwasCatalogFileIterator​(java.lang.String fileName)