Class FunctionBoolGenotype

  • Direct Known Subclasses:
    IsHet, IsHom, IsRef, IsVariant

    public abstract class FunctionBoolGenotype
    extends Function
    A function that returns a bool type (i.e. true or false). The function is evaluated on a genotype
    Author:
    pablocingolani
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      protected org.snpeff.vcf.VcfGenotype evalGenotype​(org.snpeff.vcf.VcfEntry vcfEntry)
      Evaluate index expression and obtein genotype
      java.lang.String toString()  
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
    • Constructor Detail

      • FunctionBoolGenotype

        public FunctionBoolGenotype​(java.lang.String functionName,
                                    Expression exprIdx)
    • Method Detail

      • evalGenotype

        protected org.snpeff.vcf.VcfGenotype evalGenotype​(org.snpeff.vcf.VcfEntry vcfEntry)
        Evaluate index expression and obtein genotype
      • toString

        public java.lang.String toString()
        Overrides:
        toString in class Function